In Xilinx’ ISE suite, it is possible to delete all files except for a small subset, and the tool gracefully fills the gaps on its next run. This tool is still evolving, so there are significant differences even with respect to 2013.4, and probably related to later version (to be released). Vivado’s revision is assumed to be 2014.1 here. Unfortunately, Vivado’s Tcl script still needs some modifications to function properly in a standalone package. It’s not as difficult as it may appear, since Vivado can output Tcl scripts that regenerate the project’s current state. This page suggest an alternative, which is based upon Tcl scripting. Merging two sets of the project by virtue of manipulating text files is probably impossible with this format, so it’s not very suitable for version control either.
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